download Download Data
Access and download our genomic databases and catalogs.
database
16S Database (SILVA)
| File Name | Size & Type | Date | MD5 | Description |
|---|---|---|---|---|
| download SILVA_138.1_pig_gut_16S.fna.gz | XXX MB FASTA GZ | XXX | XXX | Full 16S rRNA sequences from pig gut microbiome (SILVA v138.1) |
| download SILVA_138.1_pig_gut_taxonomy.tsv.gz | XXX MB TSV GZ | XXX | XXX | Taxonomic classifications for 16S sequences |
| download SILVA_138.1_pig_gut_metadata.json.gz | XXX MB JSON GZ | XXX | XXX | Metadata for all 16S sequences including sample information |
database
18S Database
| File Name | Size & Type | Date | MD5 | Description |
|---|---|---|---|---|
| download pig_gut_18S_v2.fna.gz | XXX MB FASTA GZ | XXX | XXX | 18S rRNA gene sequences from pig gut eukaryotic microorganisms |
| download 18S_tax_annotation_v2.tsv.gz | XXX MB TSV GZ | XXX | XXX | Taxonomic annotations for 18S sequences |
database
ITS Database
| File Name | Size & Type | Date | MD5 | Description |
|---|---|---|---|---|
| download pig_gut_ITS_2023.fna.gz | XXX MB FASTA GZ | XXX | XXX | Internal Transcribed Spacer (ITS) sequences from pig gut fungi |
| download ITS_taxonomy_mapping.csv.gz | XXX MB CSV GZ | XXX | XXX | Taxonomic mapping for ITS sequences |
dna
Genomes
| File Name | Size & Type | Date | MD5 | Description |
|---|---|---|---|---|
| download pig_gut_reference_genomes_v4.tar.gz | XXX GB TAR GZ | XXX | XXX | Complete reference genomes of common pig gut microorganisms |
| download annotated_genomes_v4.zip | XXX GB ZIP | XXX | XXX | Fully annotated genome files with gene predictions |
label
Taxonomic Annotation
| File Name | Size & Type | Date | MD5 | Description |
|---|---|---|---|---|
| download mgs_tax_annotation_v3.fna.gz | XXX GB FASTA GZ | XXX | XXX | Taxonomic annotation of MetaGenomic Species (fna.gz) |
| download mgs_taxonomy_index_v3.tsv.gz | XXX MB TSV GZ | XXX | XXX | Taxonomy index for MetaGenomic Species |
inventory_2
Non-redundant fna.gz
| File Name | Size & Type | Date | MD5 | Description |
|---|---|---|---|---|
| download pig_gut_nr_v5.fna.gz | XXX GB FASTA GZ | XXX | XXX | Non-redundant gene catalog for pig gut microbiome |
| download nr_cluster_info_v5.csv.gz | XXX MB CSV GZ | XXX | XXX | Cluster information for non-redundant gene catalog |
medical_services
AMR Genes
| File Name | Size & Type | Date | MD5 | Description |
|---|---|---|---|---|
| download pig_gut_amr_genes_v3.faa.gz | XXX MB FASTA GZ | XXX | XXX | Antimicrobial resistance genes identified in pig gut microbiome |
| download amr_annotation_v3.csv.gz | XXX MB CSV GZ | XXX | XXX | Detailed annotations for AMR genes including resistance classes |
hub
All Genes
| File Name | Size & Type | Date | MD5 | Description |
|---|---|---|---|---|
| download pig_gut_all_genes_v6.fna.gz | XXX GB FASTA GZ | XXX | XXX | Complete catalog of all identified genes in pig gut microbiome |
| download gene_annotations_v6.tsv.gz | XXX GB TSV GZ | XXX | XXX | Functional annotations for all genes (KEGG, COG, etc.) |